Players from NAIA schools taken in the 2024 Major League Baseball draft:
| Position | Player | School | Round | Overall | MLB team | Story |
| RHP | Ramsey David | Southeastern | 10 | 313 | Astros | |
| RHP | Sean Heppner | British Columbia | 12 | 355 | Guardians | story |
| RHP | Drake George | Lewis-Clark State | 13 | 388 | Giants | story |
| RHP | Cohen Achen | Lindsey Wilson | 14 | 429 | Orioles | story |
| RHP | Ryan Mathiesen | The Master's | 14 | 433 | Astros | story |
| RHP | Colby Martin | Southeastern | 16 | 487 | Blue Jays | |
| RHP | Vicarte Domingo | British Columbia | 19 | 570 | Padres |
